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Crystal structure of ConA-R5M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 20% polyethylene glycol 6000, 20 mM HEPES, 100 mM NaCl, 5 mM CaCl2, 5 mM MnCl2
Crystal Properties Matthews coefficient Solvent content 2.34 47.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.415 α = 90 b = 64.086 β = 92.9 c = 126.106 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.9796 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 125.94 96.4 3.4 3.7 38854
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 125.94 38854 1937 96.32 0.20487 0.20118 0.2251 0.27666 0.2928 RANDOM 54.342
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 0.51 4.05 -2.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.864 r_dihedral_angle_3_deg 17.343 r_dihedral_angle_4_deg 12.784 r_long_range_B_refined 9.504 r_long_range_B_other 9.503 r_dihedral_angle_1_deg 8.492 r_scangle_other 6.886 r_mcangle_it 6.799 r_mcangle_other 6.799 r_scbond_it 4.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.864 r_dihedral_angle_3_deg 17.343 r_dihedral_angle_4_deg 12.784 r_long_range_B_refined 9.504 r_long_range_B_other 9.503 r_dihedral_angle_1_deg 8.492 r_scangle_other 6.886 r_mcangle_it 6.799 r_mcangle_other 6.799 r_scbond_it 4.582 r_scbond_other 4.581 r_mcbond_it 4.542 r_mcbond_other 4.537 r_angle_other_deg 1.88 r_angle_refined_deg 1.824 r_chiral_restr 0.119 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6949 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing