☰ Navigation Tabs
Structure of house dust mite allergen Der f 21 in PEG400
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.19M Tris pH 8.0, 32% PEG 400
Crystal Properties Matthews coefficient Solvent content 2.26 45.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.456 α = 90 b = 27.714 β = 125.84 c = 90.252 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2014-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 19.6 99.5 0.026 0.031 0.016 1 22.6 3.3 41016
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52 95.6 0.258 0.32 0.187 0.977 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.49 19.6 38905 2111 99.42 0.1417 0.1386 0.1394 0.1983 0.1979 RANDOM 31.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.89 0.44 0.17 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.28 r_sphericity_free 31.391 r_sphericity_bonded 16.74 r_dihedral_angle_3_deg 12.945 r_dihedral_angle_4_deg 11.66 r_rigid_bond_restr 5.733 r_dihedral_angle_1_deg 4.039 r_angle_refined_deg 1.851 r_angle_other_deg 1.263 r_chiral_restr 0.099
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.28 r_sphericity_free 31.391 r_sphericity_bonded 16.74 r_dihedral_angle_3_deg 12.945 r_dihedral_angle_4_deg 11.66 r_rigid_bond_restr 5.733 r_dihedral_angle_1_deg 4.039 r_angle_refined_deg 1.851 r_angle_other_deg 1.263 r_chiral_restr 0.099 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.006 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1934 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction Aimless data scaling PHASER phasing XDS data reduction Coot model building