☰ Navigation Tabs
HBP35 of Porphyromonas gingivalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 10-15% PEG 400, 20% Ethanol
Crystal Properties Matthews coefficient Solvent content 2.17 43.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.016 α = 90 b = 58.324 β = 90 c = 114.417 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2005-10-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.9791 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.5 0.081 24 6.5 30871
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 31.93 29243 1567 99.27 0.1777 0.17586 0.21134 0.2063 RANDOM 17.791
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.506 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_4_deg 8.459 r_dihedral_angle_1_deg 6.069 r_scangle_it 2.965 r_scbond_it 2.071 r_angle_refined_deg 1.328 r_mcangle_it 1.274 r_mcbond_it 0.818 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.506 r_dihedral_angle_3_deg 15.037 r_dihedral_angle_4_deg 8.459 r_dihedral_angle_1_deg 6.069 r_scangle_it 2.965 r_scbond_it 2.071 r_angle_refined_deg 1.328 r_mcangle_it 1.274 r_mcbond_it 0.818 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.215 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.202 r_xyhbond_nbd_refined 0.125 r_chiral_restr 0.095 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2411 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOLREP data reduction SCALEPACK data scaling SOLVE phasing