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Crystal structure of Mycobacterium smegmatis BioQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 0.15 M DL-malic acid (pH 7.0), 0.1 M imidazole (pH 7.0), 22% (v/v) PEG mono-methyl ether 550
Crystal Properties Matthews coefficient Solvent content 2.73 54.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.041 α = 90 b = 190.179 β = 90 c = 83.413 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 195 PIXEL DECTRIS PILATUS3 S 6M 2017-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NFPSS BEAMLINE BL18U 0.9778 NFPSS BL18U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.7 41.2 12.7 38389
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 50 36482 1907 99.52 0.1816 0.17913 0.1884 0.22908 0.2395 RANDOM 48.456
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.74 -3.39 4.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.164 r_dihedral_angle_4_deg 16.61 r_dihedral_angle_3_deg 13.317 r_long_range_B_refined 9.556 r_long_range_B_other 9.545 r_scangle_other 8.34 r_scbond_it 5.752 r_scbond_other 5.751 r_mcangle_other 5.355 r_mcangle_it 5.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.164 r_dihedral_angle_4_deg 16.61 r_dihedral_angle_3_deg 13.317 r_long_range_B_refined 9.556 r_long_range_B_other 9.545 r_scangle_other 8.34 r_scbond_it 5.752 r_scbond_other 5.751 r_mcangle_other 5.355 r_mcangle_it 5.354 r_dihedral_angle_1_deg 5.003 r_mcbond_it 4.185 r_mcbond_other 4.132 r_angle_refined_deg 1.796 r_angle_other_deg 1.073 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2718 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing