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Mycobacterium tuberculosis Pantothenate kinase mutant F247A/F254A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GEU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 7.5 295 2% PEG 400,
2.0 M Ammonium sulphate,
100mM HEPES sodium salt
Crystal Properties Matthews coefficient Solvent content 3.68 66.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.33 α = 90 b = 119.33 β = 90 c = 127.44 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.95372 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 43.55 99.7 0.082 15.5 7.5 49403
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.38 100 0.498 3.7 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2GEU 2.26 43.55 46901 2500 99.52 0.19285 0.19098 0.1966 0.22796 0.2304 RANDOM 41.687
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.35 -0.7 2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.445 r_dihedral_angle_3_deg 19.252 r_dihedral_angle_4_deg 18.123 r_long_range_B_refined 9.693 r_long_range_B_other 9.692 r_scangle_other 7.312 r_dihedral_angle_1_deg 6.634 r_mcangle_it 5.815 r_mcangle_other 5.815 r_scbond_it 4.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.445 r_dihedral_angle_3_deg 19.252 r_dihedral_angle_4_deg 18.123 r_long_range_B_refined 9.693 r_long_range_B_other 9.692 r_scangle_other 7.312 r_dihedral_angle_1_deg 6.634 r_mcangle_it 5.815 r_mcangle_other 5.815 r_scbond_it 4.858 r_scbond_other 4.856 r_mcbond_it 3.962 r_mcbond_other 3.957 r_angle_refined_deg 2.045 r_angle_other_deg 1.007 r_chiral_restr 0.132 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4652 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 123
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing