X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.72936% polyethylene glycol 4000, 8% glycerol, 0.1 M MES, 30 mM CaCl2, 30 mM MgCl2, PH 6.7
Crystal Properties
Matthews coefficientSolvent content
3.1160.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.251α = 90
b = 157.375β = 90
c = 182.467γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2016-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.97915ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.81119.1799.84.278443

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.81119.1774511356296.550.228550.226660.26546RANDOM52.388
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.39-0.410.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.732
r_dihedral_angle_3_deg13.764
r_dihedral_angle_4_deg12.78
r_dihedral_angle_1_deg5.627
r_long_range_B_refined4.573
r_long_range_B_other4.573
r_mcangle_it2.823
r_mcangle_other2.823
r_scangle_other2.489
r_mcbond_it1.611
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.732
r_dihedral_angle_3_deg13.764
r_dihedral_angle_4_deg12.78
r_dihedral_angle_1_deg5.627
r_long_range_B_refined4.573
r_long_range_B_other4.573
r_mcangle_it2.823
r_mcangle_other2.823
r_scangle_other2.489
r_mcbond_it1.611
r_mcbond_other1.611
r_scbond_it1.39
r_scbond_other1.39
r_angle_refined_deg1.238
r_angle_other_deg0.89
r_chiral_restr0.082
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms17019
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms236

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata reduction
Cootmodel building
PHENIXmodel building
HKL-2000data collection
PHENIXrefinement