☰ Navigation Tabs
Crystal structure of colwellia psychrerythraea strain 34H isoaspartyl dipeptidase E80Q mutant complexed with beta-isoaspartyl lysine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Bis-Tris propane pH 7.0
1 M ammonium citrate tribasic pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.64 53.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.878 α = 90 b = 107.878 β = 90 c = 155.879 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 50.01 97.1 31.8 6.8 36407
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.33 50.01 36407 1910 95.88 0.19177 0.18886 0.1957 0.24636 0.2491 RANDOM 39.708
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.72 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 24.997 r_dihedral_angle_3_deg 15.283 r_long_range_B_refined 8.272 r_long_range_B_other 8.245 r_dihedral_angle_1_deg 7.503 r_scangle_other 6.071 r_mcangle_other 4.634 r_mcangle_it 4.633 r_scbond_it 4.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.197 r_dihedral_angle_4_deg 24.997 r_dihedral_angle_3_deg 15.283 r_long_range_B_refined 8.272 r_long_range_B_other 8.245 r_dihedral_angle_1_deg 7.503 r_scangle_other 6.071 r_mcangle_other 4.634 r_mcangle_it 4.633 r_scbond_it 4.038 r_scbond_other 4.038 r_mcbond_it 3.17 r_mcbond_other 3.168 r_angle_refined_deg 1.84 r_angle_other_deg 1.075 r_chiral_restr 0.111 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5780 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling