☰ Navigation Tabs
Crystal structure of Mycobacterium smegmatis MutT1 in complex with ATP (I)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5GG5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 8.5 293 0.2M sodium acetate trihydrate, 0.1M Tris-HCl pH 8.5, 30%(w/v) PEG4000
Crystal Properties Matthews coefficient Solvent content 2.03 39.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.03 α = 90 b = 84.21 β = 92.89 c = 43.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2016-04-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 38.81 97.3 12.9 5 28450
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.88 94.9 1.8 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5gg5 1.78 38.81 27012 1433 97.38 0.16428 0.16214 0.1725 0.20447 0.2123 RANDOM 30.899
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 1 -0.97 1.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.524 r_dihedral_angle_4_deg 18.531 r_dihedral_angle_3_deg 14.544 r_long_range_B_refined 7.636 r_long_range_B_other 7.429 r_dihedral_angle_1_deg 6.562 r_scangle_other 5.449 r_scbond_it 3.602 r_scbond_other 3.595 r_mcangle_other 3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.524 r_dihedral_angle_4_deg 18.531 r_dihedral_angle_3_deg 14.544 r_long_range_B_refined 7.636 r_long_range_B_other 7.429 r_dihedral_angle_1_deg 6.562 r_scangle_other 5.449 r_scbond_it 3.602 r_scbond_other 3.595 r_mcangle_other 3.52 r_mcangle_it 3.519 r_mcbond_it 2.471 r_mcbond_other 2.467 r_angle_refined_deg 1.888 r_angle_other_deg 0.865 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2292 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement iMOSFLM data processing SCALA data scaling PHASER phasing iMOSFLM data reduction