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Crystal structure of the SmcR complexed with QStatin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KZ9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 294.15 0.2M Li2SO4, 7% PEG3000, 0.1 M imidazole, pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.69 54.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.669 α = 90 b = 99.21 β = 90 c = 129.407 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100.15 DIFFRACTOMETER ADSC QUANTUM 270 2013-07-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9795 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.8 0.082 53.54 14.5 59830
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 100 0.514 14.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3KZ9 2.1 35 56748 3012 99.53 0.19077 0.1872 0.1875 0.25794 0.2603 RANDOM 42.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.5 4.14 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.829 r_dihedral_angle_4_deg 22.124 r_dihedral_angle_3_deg 18.301 r_long_range_B_refined 9.286 r_dihedral_angle_1_deg 6.523 r_scbond_it 5.514 r_mcangle_it 4.428 r_mcbond_it 3.272 r_angle_refined_deg 2.525 r_chiral_restr 0.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.829 r_dihedral_angle_4_deg 22.124 r_dihedral_angle_3_deg 18.301 r_long_range_B_refined 9.286 r_dihedral_angle_1_deg 6.523 r_scbond_it 5.514 r_mcangle_it 4.428 r_mcbond_it 3.272 r_angle_refined_deg 2.525 r_chiral_restr 0.184 r_bond_refined_d 0.029 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6555 Nucleic Acid Atoms Solvent Atoms 462 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing