5WVA

Serratia marcescens short-chain dehydrogenase/reductase F98Y/F202Y mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP729850mM HEPES buffer (pH 7.0), 40% (v/v) tacsimate (pH 7.0), 2mM spermine, 2mM hexamine cobalt (III) chloride
Crystal Properties
Matthews coefficientSolvent content
1.7127.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.925α = 90
b = 83.925β = 90
c = 115.038γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray150CCDRAYONIX MX300HE2016-10-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL15A11.0NSRRCBL15A1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4767.551000.0490.00985.128.170468
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.471.520.999

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4ZGW1.4767.5566030339198.610.176380.174830.20663RANDOM17.083
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.1-0.10.2
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.913
r_dihedral_angle_4_deg15.443
r_dihedral_angle_3_deg12.558
r_dihedral_angle_1_deg6.733
r_long_range_B_refined5.619
r_long_range_B_other5.441
r_scangle_other4.836
r_scbond_it3.334
r_scbond_other3.333
r_mcangle_it2.627
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.913
r_dihedral_angle_4_deg15.443
r_dihedral_angle_3_deg12.558
r_dihedral_angle_1_deg6.733
r_long_range_B_refined5.619
r_long_range_B_other5.441
r_scangle_other4.836
r_scbond_it3.334
r_scbond_other3.333
r_mcangle_it2.627
r_mcangle_other2.626
r_angle_refined_deg2.54
r_mcbond_it1.859
r_mcbond_other1.859
r_angle_other_deg1.235
r_chiral_restr0.155
r_bond_refined_d0.028
r_gen_planes_refined0.012
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3321
Nucleic Acid Atoms
Solvent Atoms347
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
SCALEPACKdata scaling
AMoREphasing