☰ Navigation Tabs
Crystal structure of Trk-A complexed with a selective inhibitor CH7057288
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 0.05-0.15M KH2PO4, 0.1M MES pH 6.25, 1.5-2.5M NaCl, 0.05-0.15M NaH2PO4, 0.01M TCEP HCl
Crystal Properties Matthews coefficient Solvent content 3.11 60.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.262 α = 90 b = 104.262 β = 90 c = 203.609 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2015-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.76 82.54 99.7 0.119 13.7 4.9 11208
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.76 3.01 100 0.435 4.6 5 2525
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT RIGID BODY 2.76 82.54 10486 721 99.66 0.20818 0.20634 0.2084 0.23434 0.2344 RANDOM 40.719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.25 0.51 -1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.483 r_dihedral_angle_3_deg 12.634 r_dihedral_angle_4_deg 11.79 r_dihedral_angle_1_deg 4.966 r_long_range_B_refined 4.937 r_long_range_B_other 4.937 r_scangle_other 3.297 r_mcangle_it 3.158 r_mcangle_other 3.157 r_angle_other_deg 2.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.483 r_dihedral_angle_3_deg 12.634 r_dihedral_angle_4_deg 11.79 r_dihedral_angle_1_deg 4.966 r_long_range_B_refined 4.937 r_long_range_B_other 4.937 r_scangle_other 3.297 r_mcangle_it 3.158 r_mcangle_other 3.157 r_angle_other_deg 2.582 r_scbond_it 2.003 r_scbond_other 2.002 r_mcbond_it 1.808 r_mcbond_other 1.808 r_angle_refined_deg 1.197 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2426 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 41
Software Software Software Name Purpose XDS data reduction XSCALE data scaling REFMAC refinement REFMAC phasing