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De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 2.0% PEG1000, 1.0 M AmSO4 and 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.81 74.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.782 α = 90 b = 80.782 β = 90 c = 64.923 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 70.01 99.2 0.097 11.8 10.4 19614
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.02 96.2 0.844 2.2 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 70.01 15869 809 84.71 0.22035 0.21942 0.23778 0.2105 RANDOM 25.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.35 -0.71 2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.505 r_dihedral_angle_4_deg 16.792 r_dihedral_angle_3_deg 15.707 r_dihedral_angle_1_deg 4.208 r_long_range_B_refined 3.086 r_long_range_B_other 3.085 r_angle_refined_deg 1.162 r_angle_other_deg 0.893 r_scangle_other 0.593 r_mcangle_it 0.548
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.505 r_dihedral_angle_4_deg 16.792 r_dihedral_angle_3_deg 15.707 r_dihedral_angle_1_deg 4.208 r_long_range_B_refined 3.086 r_long_range_B_other 3.085 r_angle_refined_deg 1.162 r_angle_other_deg 0.893 r_scangle_other 0.593 r_mcangle_it 0.548 r_mcangle_other 0.548 r_scbond_it 0.36 r_scbond_other 0.345 r_mcbond_it 0.328 r_mcbond_other 0.328 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 908 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing