Experiment: 5W9Q

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7.5	291	25% PEG-400, 0.2 M magnesium chloride, 0.1 M hepes

Crystal Properties
Matthews coefficient	Solvent content
2.2	43.4

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 139.339	α = 90
b = 27.8	β = 106.52
c = 64.914	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	RAYONIX MX-300		2013-06-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.979590	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	33.69	99.8	0.046	0.054	0.028	0.998	13.3	3.7		22639

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.84	99.9		0.726	0.848	0.435	0.807		3.7	1337

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB entries 4HP3, 3QMD	1.8	33.69	21331	1306	99.61	0.2277	0.2262	0.2532	thin shells (sftools)	48.642

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.63		0.36	-4.31		4.86

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.855
r_dihedral_angle_3_deg	13.875
r_dihedral_angle_4_deg	13.468
r_dihedral_angle_1_deg	6.116
r_angle_refined_deg	1.509
r_mcangle_it	1.393
r_angle_other_deg	1.367
r_mcbond_it	0.836
r_mcbond_other	0.815
r_chiral_restr	0.088

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.855
r_dihedral_angle_3_deg	13.875
r_dihedral_angle_4_deg	13.468
r_dihedral_angle_1_deg	6.116
r_angle_refined_deg	1.509
r_mcangle_it	1.393
r_angle_other_deg	1.367
r_mcbond_it	0.836
r_mcbond_other	0.815
r_chiral_restr	0.088
r_bond_refined_d	0.015
r_gen_planes_refined	0.011
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	839
Nucleic Acid Atoms	972
Solvent Atoms	46
Heterogen Atoms	20

Software

Software
Software Name	Purpose
Aimless	data reduction
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.