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Structure of RORgt bound to a tertiary alcohol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LOL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.1 M Tris-HCl, pH 8.4, 3.3 %(w/v) PEG 8000
Crystal Properties Matthews coefficient Solvent content 3.17 61.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.118 α = 90 b = 133.118 β = 90 c = 181.843 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2012-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 30 99.2 5.6 6.6 54160 42.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3LOL 2.65 29.348 1.33 53529 2702 98.02 0.3446 0.3425 0.3497 0.3835 0.3849 38.6129
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.846 f_angle_d 0.529 f_chiral_restr 0.034 f_bond_d 0.002 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10119 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 402
Software Software Software Name Purpose SCALA data scaling PHENIX refinement PDB_EXTRACT data extraction REFMAC phasing