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Crystal structure of human PARP14 bound to 2-{[(1-methylpiperidin-4-yl)methyl]amino}-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4(3H)-one inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 298 20% PEG3350, 0.2M Sodium-malonate, pH 7.2-7.8
Crystal Properties Matthews coefficient Solvent content 2.95 58.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.049 α = 90 b = 144.907 β = 90 c = 83.428 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD MARMOSAIC 325 mm CCD 2014-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 1.2398 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 72.45 99.88 9.8 3.7 14247
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.65 72.45 14247 758 99.88 0.20678 0.20351 0.205 0.26595 0.2683 RANDOM 49.378
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.41 -4.36 1.94
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.093 r_dihedral_angle_2_deg 32.219 r_dihedral_angle_4_deg 15.494 r_dihedral_angle_3_deg 14.535 r_sphericity_bonded 9.04 r_dihedral_angle_1_deg 5.259 r_long_range_B_refined 3.563 r_mcangle_it 1.836 r_scbond_it 1.665 r_mcbond_it 1.396
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 42.093 r_dihedral_angle_2_deg 32.219 r_dihedral_angle_4_deg 15.494 r_dihedral_angle_3_deg 14.535 r_sphericity_bonded 9.04 r_dihedral_angle_1_deg 5.259 r_long_range_B_refined 3.563 r_mcangle_it 1.836 r_scbond_it 1.665 r_mcbond_it 1.396 r_rigid_bond_restr 1.313 r_angle_refined_deg 0.958 r_chiral_restr 0.065 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2823 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing