☰ Navigation Tabs
Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZIZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 7 277 75 mM HEPES pH 7, 20 mM MgCl2, 9 % PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.68 54.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 186.4 α = 90 b = 186.4 β = 90 c = 60.3 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS3 6M 2016-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 50.01 99.7 0.986 7.6 156.4 6280
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.18 0.799
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZIZ 3.1 50.01 6280 1082 99.69 0.17723 0.17248 0.1868 0.20474 0.2136 RANDOM 48.046
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.72 -0.36 -0.72 2.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.345 r_dihedral_angle_4_deg 15.188 r_dihedral_angle_3_deg 14.375 r_long_range_B_refined 7.711 r_long_range_B_other 7.711 r_scangle_other 5.056 r_dihedral_angle_1_deg 5.012 r_mcangle_it 3.765 r_mcangle_other 3.764 r_scbond_it 3.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.345 r_dihedral_angle_4_deg 15.188 r_dihedral_angle_3_deg 14.375 r_long_range_B_refined 7.711 r_long_range_B_other 7.711 r_scangle_other 5.056 r_dihedral_angle_1_deg 5.012 r_mcangle_it 3.765 r_mcangle_other 3.764 r_scbond_it 3.094 r_scbond_other 3.093 r_mcbond_it 2.362 r_mcbond_other 2.362 r_angle_refined_deg 2.093 r_angle_other_deg 1.058 r_chiral_restr 0.073 r_gen_planes_other 0.015 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2497 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 129
Software Software Software Name Purpose REFMAC refinement CrystFEL data scaling CrystFEL data reduction MOLREP phasing Cheetah data collection