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Crystal structure of human KRAS G12V mutant in complex with GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M Bis-Tris, 25% w/v PEG3350, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2 38.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.344 α = 90 b = 84.344 β = 90 c = 41.809 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2012-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 30 98.6 0.161 8.6 4.3 52602 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 90.5 0.239 5.7 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 29.69 49947 2654 99.38 0.11847 0.11666 0.1248 0.15272 0.1539 RANDOM 16.818
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.47 -2.47 4.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.03 r_dihedral_angle_4_deg 15.976 r_dihedral_angle_3_deg 13.517 r_dihedral_angle_1_deg 6.327 r_long_range_B_refined 6.042 r_long_range_B_other 5.992 r_scangle_other 4.884 r_scbond_other 3.625 r_scbond_it 3.62 r_mcangle_it 2.932
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.03 r_dihedral_angle_4_deg 15.976 r_dihedral_angle_3_deg 13.517 r_dihedral_angle_1_deg 6.327 r_long_range_B_refined 6.042 r_long_range_B_other 5.992 r_scangle_other 4.884 r_scbond_other 3.625 r_scbond_it 3.62 r_mcangle_it 2.932 r_mcangle_other 2.932 r_mcbond_it 2.193 r_mcbond_other 2.161 r_angle_refined_deg 1.676 r_angle_other_deg 0.742 r_chiral_restr 0.104 r_gen_planes_refined 0.017 r_bond_refined_d 0.016 r_gen_planes_other 0.002 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2564 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 58
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PHASER phasing