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Human antibody H2897 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3SM5 PDB entry 3SM5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 10% w/v PEG8000, 100 mM HEPES
Crystal Properties Matthews coefficient Solvent content 5.68 78.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.2 α = 90 b = 142.2 β = 90 c = 200.41 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293.15 CCD ADSC QUANTUM 315 2015-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.97923 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 46.41 98.6 0.274 0.322 0.987 5.75 3.672 32426 -3 116.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.4 3.61 97 3.473 0.429 0.44 3.726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3SM5 3.4 46.41 32418 1621 98.6 0.242 0.24 0.2876 0.278 0.3249 RANDOM 158.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -36.0706 -36.0706 72.1412
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.57 t_omega_torsion 2.61 t_angle_deg 1.26 t_bond_d 0.009 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.57 t_omega_torsion 2.61 t_angle_deg 1.26 t_bond_d 0.009 t_dihedral_angle_d t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_pseud_angle t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7241 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 176
Software Software Software Name Purpose XSCALE data scaling PHASER phasing BUSTER refinement PDB_EXTRACT data extraction XDS data reduction