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Crystal structure of Co-CAO1 in complex with resveratrol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 sodium polyacrylate/HEPES 6.5
Crystal Properties Matthews coefficient Solvent content 2.77 55.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.05 α = 90 b = 101.05 β = 90 c = 447.54 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97919 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.28 100 8.66 12.1 209824
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5U8X 1.9 49.28 200392 9432 99.97 0.16934 0.16812 0.19441 0.1822 RANDOM 42.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.2 0.39 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.871 r_dihedral_angle_4_deg 15.131 r_dihedral_angle_3_deg 13.182 r_dihedral_angle_1_deg 7.069 r_long_range_B_refined 6.954 r_long_range_B_other 6.807 r_scangle_other 5.523 r_scbond_it 3.923 r_scbond_other 3.923 r_mcangle_it 3.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.871 r_dihedral_angle_4_deg 15.131 r_dihedral_angle_3_deg 13.182 r_dihedral_angle_1_deg 7.069 r_long_range_B_refined 6.954 r_long_range_B_other 6.807 r_scangle_other 5.523 r_scbond_it 3.923 r_scbond_other 3.923 r_mcangle_it 3.603 r_mcangle_other 3.603 r_mcbond_it 2.873 r_mcbond_other 2.873 r_angle_refined_deg 1.578 r_angle_other_deg 0.952 r_chiral_restr 0.098 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15958 Nucleic Acid Atoms Solvent Atoms 1543 Heterogen Atoms 214
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling