☰ Navigation Tabs
Discovery of TAK-659, an Orally Available Investigational Inhibitor of Spleen Tyrosine Kinase (SYK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.1 293 0.7M Potassium Na Tartrate, 0.06M MES_Na, 0.04M MES
Crystal Properties Matthews coefficient Solvent content 2.43 49.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.941 α = 90 b = 85.283 β = 90 c = 90.283 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.9764848 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 99.49 17.6 5.1 22613
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.93 30 22613 1204 99.49 0.1945 0.1933 0.1989 0.2172 0.2217 RANDOM 35.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -2.25 2.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.019 r_dihedral_angle_4_deg 18.726 r_dihedral_angle_3_deg 11.99 r_dihedral_angle_1_deg 5.522 r_mcangle_it 1.672 r_angle_refined_deg 1.121 r_mcbond_other 0.96 r_mcbond_it 0.959 r_angle_other_deg 0.85 r_chiral_restr 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.019 r_dihedral_angle_4_deg 18.726 r_dihedral_angle_3_deg 11.99 r_dihedral_angle_1_deg 5.522 r_mcangle_it 1.672 r_angle_refined_deg 1.121 r_mcbond_other 0.96 r_mcbond_it 0.959 r_angle_other_deg 0.85 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2217 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 29
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing DENZO data reduction SCALEPACK data scaling