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Gasdermin-B C-terminal domain containing the polymorphism residues Gly299:Ser306 fused to maltose binding protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TIB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 295 2.1 M sodium malonate, 10 mM EDTA
Crystal Properties Matthews coefficient Solvent content 2.91 57.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.039 α = 90 b = 152.75 β = 90 c = 255.77 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD MARMOSAIC 300 mm CCD 2015-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.0332 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 42.5 99.6 0.155 11.3 6.1 65695
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5TIB 2.8 42.5 65695 3596 99.58 0.2153 0.2133 0.2163 0.2524 0.2178 RANDOM 64.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.88 2.65 -1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.296 r_dihedral_angle_4_deg 18.759 r_dihedral_angle_3_deg 15.656 r_mcangle_it 7.911 r_dihedral_angle_1_deg 5.703 r_mcbond_it 5.042 r_mcbond_other 5.041 r_angle_refined_deg 1.474 r_angle_other_deg 1.345 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.296 r_dihedral_angle_4_deg 18.759 r_dihedral_angle_3_deg 15.656 r_mcangle_it 7.911 r_dihedral_angle_1_deg 5.703 r_mcbond_it 5.042 r_mcbond_other 5.041 r_angle_refined_deg 1.474 r_angle_other_deg 1.345 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15746 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 92
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction