5SXA

Crystal Structure of PI3Kalpha in complex with fragment 10


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298NaFormate
Crystal Properties
Matthews coefficientSolvent content
3.1861.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 115.225α = 90
b = 117.367β = 90
c = 152.057γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2014-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.3592.911000.1048.47.330528
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.353.471000.8627.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT4OVU3.3592.9128743154999.870.22450.22180.2745RANDOM134.484
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-26.76-4.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.72
r_dihedral_angle_3_deg18.229
r_dihedral_angle_4_deg17.096
r_mcangle_it10.942
r_dihedral_angle_1_deg7.232
r_mcbond_it6.731
r_mcbond_other6.729
r_angle_refined_deg1.332
r_angle_other_deg0.954
r_chiral_restr0.077
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.72
r_dihedral_angle_3_deg18.229
r_dihedral_angle_4_deg17.096
r_mcangle_it10.942
r_dihedral_angle_1_deg7.232
r_mcbond_it6.731
r_mcbond_other6.729
r_angle_refined_deg1.332
r_angle_other_deg0.954
r_chiral_restr0.077
r_bond_refined_d0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10506
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms14

Software

Software
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
REFMACphasing