5SWR

Crystal Structure of PI3Kalpha in complex with fragments 20 and 26


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298NaFormate
Crystal Properties
Matthews coefficientSolvent content
3.0759.95

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.236α = 90
b = 116.331β = 90
c = 149.299γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2014-10-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.0ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.391.7699.70.0979.27.230235
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.33.4298.80.6396.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT4OVU3.3191.7628638154799.30.20140.19770.2726RANDOM119.805
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.881.27-3.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.087
r_dihedral_angle_3_deg18.08
r_dihedral_angle_4_deg15.104
r_mcangle_it11.323
r_dihedral_angle_1_deg7.271
r_mcbond_it7.263
r_mcbond_other7.25
r_angle_refined_deg1.449
r_angle_other_deg0.977
r_chiral_restr0.083
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.087
r_dihedral_angle_3_deg18.08
r_dihedral_angle_4_deg15.104
r_mcangle_it11.323
r_dihedral_angle_1_deg7.271
r_mcbond_it7.263
r_mcbond_other7.25
r_angle_refined_deg1.449
r_angle_other_deg0.977
r_chiral_restr0.083
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10768
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms24

Software

Software
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
REFMACphasing