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PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library G09a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 290 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.9 35.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.204 α = 90 b = 73.125 β = 109.32 c = 52.644 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.827 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.99 42.69 97.8 0.053 0.057 0.999 13.3 6.558 167439 15.171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.99 1.05 0.87 1.561 1.731 0.337 0.84 4.61 29062
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 0.99 42.69 167439 8984 97.85 0.1588 0.15839 0.1592 0.15876 0.1623 RANDOM 12.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.31 0.13 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.016 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_1_deg 11.648 r_dihedral_angle_3_deg 11.261 r_angle_refined_deg 2.56 r_angle_other_deg 1.668 r_mcangle_it 1.483 r_mcbond_it 1.007 r_mcbond_other 0.991 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.016 r_dihedral_angle_4_deg 16.714 r_dihedral_angle_1_deg 11.648 r_dihedral_angle_3_deg 11.261 r_angle_refined_deg 2.56 r_angle_other_deg 1.668 r_mcangle_it 1.483 r_mcbond_it 1.007 r_mcbond_other 0.991 r_chiral_restr 0.089 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2371 Nucleic Acid Atoms Solvent Atoms 254 Heterogen Atoms 104
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing PHENIX refinement