5Q1N

PanDDA analysis group deposition -- Crystal Structure of DCLRE1A in complex with FMOPL000295a


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP629830% PEG1000, 0.1 M MIB buffer
Crystal Properties
Matthews coefficientSolvent content
2.244

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 52.153α = 90
b = 56.974β = 90
c = 115.081γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayPIXELDECTRIS PILATUS 6M2016-09-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I04-10.92DiamondI04-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3856.971000.1110.1210.0480.9977.26.271330
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.381.421001.271.4170.6210.5335.15207

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT5aho1.3856.9767351343799.260.20290.20080.2431RANDOM18.087
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.31-0.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.452
r_sphericity_free31.674
r_dihedral_angle_3_deg11.761
r_dihedral_angle_4_deg9.747
r_sphericity_bonded9.284
r_dihedral_angle_1_deg6.264
r_mcangle_it2.133
r_mcbond_it1.667
r_mcbond_other1.66
r_angle_refined_deg1.369
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.452
r_sphericity_free31.674
r_dihedral_angle_3_deg11.761
r_dihedral_angle_4_deg9.747
r_sphericity_bonded9.284
r_dihedral_angle_1_deg6.264
r_mcangle_it2.133
r_mcbond_it1.667
r_mcbond_other1.66
r_angle_refined_deg1.369
r_rigid_bond_restr1.223
r_angle_other_deg0.944
r_chiral_restr0.082
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2692
Nucleic Acid Atoms
Solvent Atoms313
Heterogen Atoms25

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACphasing