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rat catechol O-methyltransferase in complex with N-[2-[[5-(4-fluorophenyl)-2,3-dihydroxybenzoyl]amino]ethyl]-6-hydroxypyrimidine-4-carboxamide at 1.45A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.18 43.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.94 α = 90 b = 53.644 β = 90 c = 80.503 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 44.64 96.8 0.113 0.123 0.997 12.91 6.7 37851 -3 16.793
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.49 77 0.942 1.085 0.48 1.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.45 44.64 34870 1872 94.09 0.1529 0.1512 0.1515 0.1844 0.1842 RANDOM 8.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 0.15 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.33 r_dihedral_angle_4_deg 20.364 r_dihedral_angle_3_deg 11.678 r_dihedral_angle_1_deg 5.251 r_scangle_it 4.408 r_scbond_it 2.849 r_angle_other_deg 2.159 r_angle_refined_deg 1.943 r_mcangle_it 1.83 r_mcbond_it 1.176
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.33 r_dihedral_angle_4_deg 20.364 r_dihedral_angle_3_deg 11.678 r_dihedral_angle_1_deg 5.251 r_scangle_it 4.408 r_scbond_it 2.849 r_angle_other_deg 2.159 r_angle_refined_deg 1.943 r_mcangle_it 1.83 r_mcbond_it 1.176 r_mcbond_other 0.216 r_chiral_restr 0.127 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.012 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1689 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 64
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing