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BamA structure of Salmonella enterica
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1 M HEPES sodium (pH 7.5) and 1.0 M sodium citrate tribasic dehydrate
Crystal Properties Matthews coefficient Solvent content 3.49 64.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.037 α = 90 b = 124.037 β = 90 c = 131.48 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 146 PIXEL DECTRIS PILATUS3 S 6M 2014-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.92 130 100 7.7 17.3 13411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.92 107.42 12829 666 99.73 0.30884 0.30684 0.308 0.34703 0.3417 RANDOM 87.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.37 0.68 1.37 -4.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.218 r_dihedral_angle_3_deg 18.773 r_dihedral_angle_4_deg 16.231 r_long_range_B_refined 11.367 r_long_range_B_other 11.366 r_dihedral_angle_1_deg 8.762 r_mcangle_it 7.455 r_mcangle_other 7.454 r_scangle_other 5.896 r_mcbond_it 4.412
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.218 r_dihedral_angle_3_deg 18.773 r_dihedral_angle_4_deg 16.231 r_long_range_B_refined 11.367 r_long_range_B_other 11.366 r_dihedral_angle_1_deg 8.762 r_mcangle_it 7.455 r_mcangle_other 7.454 r_scangle_other 5.896 r_mcbond_it 4.412 r_mcbond_other 4.409 r_scbond_it 3.42 r_scbond_other 3.419 r_angle_refined_deg 1.43 r_angle_other_deg 1.11 r_chiral_restr 0.133 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2944 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing