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Thermus scotoductus SA-01 Ene-reductase triple mutant TsER_C25D_I67T_A102H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NUX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 0.1 M MES monohydrate pH 6.5, 12% w/v Polyethylene glycol 20,000
Crystal Properties Matthews coefficient Solvent content 3.21 61.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.27 α = 90 b = 103.24 β = 113.28 c = 102.72 γ = 90
Symmetry Space Group P 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M-F 2017-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9282 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 69.65 99.5 0.185 0.225 0.127 0.92 4.3 2.9 85031
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 99.3 0.668 0.82 0.47 0.54 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5NUX 2.3 69.65 80888 4142 99.45 0.2061 0.2042 0.2439 0.2602 RANDOM 22.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.28 0.64 -0.41 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.702 r_dihedral_angle_4_deg 18.69 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_1_deg 6.065 r_angle_refined_deg 1.421 r_angle_other_deg 0.973 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.702 r_dihedral_angle_4_deg 18.69 r_dihedral_angle_3_deg 13.838 r_dihedral_angle_1_deg 6.065 r_angle_refined_deg 1.421 r_angle_other_deg 0.973 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10720 Nucleic Acid Atoms Solvent Atoms 519 Heterogen Atoms 124
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction