5O7Q

Crystal structure of a single chain monellin mutant (Y65R) pH 5.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.529325% PEG3350, 0.1 M Bis/Tris pH 5.5, 0.2 M (NH4)2SO4
Crystal Properties
Matthews coefficientSolvent content
2.1643.06

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.339α = 90
b = 84.545β = 90
c = 130.517γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2015-07-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 5.2R1.065200ELETTRA5.2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.725099.79.875.621238
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.721.8299.50.8280.8865.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2O9U1.725020155108399.680.220590.218060.27064RANDOM24.492
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.32-1.592.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.944
r_dihedral_angle_4_deg19.631
r_dihedral_angle_3_deg14.203
r_long_range_B_refined5.861
r_long_range_B_other5.861
r_dihedral_angle_1_deg5.354
r_scangle_other4.475
r_scbond_it3.119
r_scbond_other3.116
r_mcangle_other2.702
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.944
r_dihedral_angle_4_deg19.631
r_dihedral_angle_3_deg14.203
r_long_range_B_refined5.861
r_long_range_B_other5.861
r_dihedral_angle_1_deg5.354
r_scangle_other4.475
r_scbond_it3.119
r_scbond_other3.116
r_mcangle_other2.702
r_mcangle_it2.7
r_angle_refined_deg2.141
r_mcbond_it1.911
r_mcbond_other1.899
r_angle_other_deg1.125
r_chiral_restr0.17
r_bond_refined_d0.029
r_gen_planes_refined0.012
r_bond_other_d0.003
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1534
Nucleic Acid Atoms
Solvent Atoms126
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction