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Solution Structure of the N-terminal Region of Dkk4
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D TROSY-HNCACB 140 uM [U-13C; U-15N] Dkk4n 95% H2O/5% D2ODkk4n 150 mM 6.5 1 atm 308 Bruker AVII 800 2 3D TROSY-HN(CO)CACB 140 uM [U-13C; U-15N] Dkk4n 95% H2O/5% D2ODkk4n 150 mM 6.5 1 atm 308 Bruker AVIII 600 3 3D TROSY-HNCO 140 uM [U-13C; U-15N] Dkk4n 95% H2O/5% D2ODkk4n 150 mM 6.5 1 atm 308 Bruker AVIII 600 4 3D HBHA(CO)NH 140 uM [U-13C; U-15N] Dkk4n 95% H2O/5% D2ODkk4n 150 mM 6.5 1 atm 308 Bruker AVIII 600 5 2D TROSY 140 uM [U-13C; U-15N] Dkk4n 95% H2O/5% D2ODkk4n 150 mM 6.5 1 atm 308 Bruker AVIII 600 6 2D 1H-1H TOCSY 90 uM [U-15N] Dkk4n 100% D2O 150 mM 6.5 1 atm 308 Bruker AVIII 600 7 2D 1H-1H NOESY 90 uM [U-15N] Dkk4n 100% D2O 150 mM 6.5 1 atm 308 Bruker AVIII 600 8 3D HCCH-TOCSY 140 uM [U-13C; U-15N] Dkk4n 100% D2O 150 mM 6.5 1 atm 308 Bruker AVIII 600 9 3D 13C/1H HSQC-NOESY 230 uM [U-13C; U-15N] Dkk4n 100% D2O 150 mM 6.5 1 atm 308 Bruker AVANCE III HD 950 10 3D 13C/1H HSQC-NOESY 230 uM [U-13C; U-15N] Dkk4n 100% D2O 150 mM 6.5 1 atm 308 Bruker AVII 800 11 3D 15N/1H NOESY-HSQC 210 uM [U-15N] Dkk4n 95% H2O/5% D2O 150 mM 6.5 1 atm 308 Bruker AVII 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVIII 600 2 Bruker AVII 800 3 Bruker AVANCE III HD 950
NMR Refinement Method Details Software simulated annealing REDAC CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 70 Representative Model 13 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky NMRFAM-Sparky 1.4 Goddard 4 structure calculation CYANA 2.1 Guntert, Mumenthaler and Wuthrich 5 refinement CYANA 2.1 Guntert, Mumenthaler and Wuthrich