5O2D

PARP14 Macrodomain 2 with inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.8M sodium phosphate monobasic, 0.8M potassium phosphate dibasic, 0.1M HEPES pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.0138.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 131.408α = 90
b = 35.74β = 94.83
c = 37.15γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELCS-PAD XPP2014-10-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.9795DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.627.6598.90.050.99812.23.822712
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6390.70.220.9253.62.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.627.6521619108798.730.132120.130030.17406RANDOM17.851
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.130.43-0.60.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.727
r_sphericity_free29.757
r_dihedral_angle_4_deg23.88
r_dihedral_angle_3_deg11.765
r_sphericity_bonded9.723
r_dihedral_angle_1_deg5.477
r_long_range_B_refined4.693
r_long_range_B_other4.253
r_scangle_other3.13
r_mcangle_other2.644
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.727
r_sphericity_free29.757
r_dihedral_angle_4_deg23.88
r_dihedral_angle_3_deg11.765
r_sphericity_bonded9.723
r_dihedral_angle_1_deg5.477
r_long_range_B_refined4.693
r_long_range_B_other4.253
r_scangle_other3.13
r_mcangle_other2.644
r_mcangle_it2.641
r_scbond_it2.492
r_scbond_other2.491
r_mcbond_it2.11
r_mcbond_other2.045
r_rigid_bond_restr1.863
r_angle_refined_deg1.48
r_angle_other_deg0.956
r_chiral_restr0.085
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1436
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms24

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
Aimlessdata scaling
PHASERphasing