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A C145A mutant of Nesterenkonia AN1 amidase from the nitrilase superfamily
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other Undeposited model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2.0 M AMMONIUM SULFATE
Crystal Properties Matthews coefficient Solvent content 2.35 47.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.814 α = 90 b = 114.977 β = 90 c = 65.827 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.917300 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 57.49 95.5 0.048 0.052 0.999 20.21 6.668 82613 -3 17.776
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.21 1.28 84.5 0.465 0.506 0.887 4.11 6.283
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Undeposited model 1.21 57.49 80620 1997 95.51 0.1688 0.1682 0.1703 0.1964 0.1988 RANDOM 14.849
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 19.149 r_dihedral_angle_3_deg 11.428 r_dihedral_angle_1_deg 6.476 r_angle_refined_deg 2.625 r_angle_other_deg 1.247 r_chiral_restr 0.186 r_bond_refined_d 0.033 r_gen_planes_refined 0.016 r_bond_other_d 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.352 r_dihedral_angle_4_deg 19.149 r_dihedral_angle_3_deg 11.428 r_dihedral_angle_1_deg 6.476 r_angle_refined_deg 2.625 r_angle_other_deg 1.247 r_chiral_restr 0.186 r_bond_refined_d 0.033 r_gen_planes_refined 0.016 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1947 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data scaling XDS data reduction PHASER phasing