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hPAD4 crystal complex with BB-F-amidine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 283 0.1M imidazole pH7.5, 0.2M LiSO4, 8-11% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.88 57.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 147.91 α = 90 b = 61.3 β = 124.83 c = 115.75 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS3 6M 2015-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 60.71 98.1 0.044 0.998 12.6 3.4 43685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.24 97.1 0.646 1.4 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.18 60.71 41520 2164 97.76 0.18985 0.18724 0.2023 0.23988 0.2568 RANDOM 52.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.91 -3.05 8.97 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.226 r_dihedral_angle_3_deg 16.049 r_dihedral_angle_4_deg 15.025 r_long_range_B_refined 10.8 r_long_range_B_other 10.8 r_scangle_other 7.162 r_dihedral_angle_1_deg 7.063 r_mcangle_it 6.052 r_mcangle_other 6.051 r_scbond_it 4.642
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.226 r_dihedral_angle_3_deg 16.049 r_dihedral_angle_4_deg 15.025 r_long_range_B_refined 10.8 r_long_range_B_other 10.8 r_scangle_other 7.162 r_dihedral_angle_1_deg 7.063 r_mcangle_it 6.052 r_mcangle_other 6.051 r_scbond_it 4.642 r_scbond_other 4.641 r_mcbond_it 4.057 r_mcbond_other 4.055 r_angle_refined_deg 1.706 r_angle_other_deg 1.033 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5007 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XSCALE data scaling PHASER phasing