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INOSITOL 1,3,4,5,6-PENTAKISPHOSPHATE 2-KINASE FROM M. MUSCULUS IN COMPLEX WITH ATP and IP5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 Magnesium Chloride, Sodium Acetate, PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.58 52.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.162 α = 90 b = 71.495 β = 111.37 c = 61.197 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M KB focusing mirrors 2016-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 71.5 97.3 0.073 0.999 14.9 6.7 18528
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.9 99.8 0.528 0.967 3.5 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 56.99 17573 938 97.25 0.24252 0.24101 0.2429 0.27117 0.2656 RANDOM 52.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.67 -9.42 -1.88 2.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.828 r_dihedral_angle_3_deg 16.035 r_dihedral_angle_4_deg 10.276 r_dihedral_angle_1_deg 5.544 r_long_range_B_refined 4.549 r_long_range_B_other 4.516 r_mcangle_it 2.632 r_mcangle_other 2.632 r_scangle_other 2.143 r_mcbond_other 1.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.828 r_dihedral_angle_3_deg 16.035 r_dihedral_angle_4_deg 10.276 r_dihedral_angle_1_deg 5.544 r_long_range_B_refined 4.549 r_long_range_B_other 4.516 r_mcangle_it 2.632 r_mcangle_other 2.632 r_scangle_other 2.143 r_mcbond_other 1.457 r_mcbond_it 1.456 r_angle_refined_deg 1.22 r_scbond_it 1.167 r_scbond_other 1.167 r_angle_other_deg 0.869 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3334 Nucleic Acid Atoms Solvent Atoms 39 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling Aimless data scaling Coot model building PHENIX phasing RESOLVE phasing