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Fab 4AB007 bound to Interleukin-1-beta
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 Protein mix:
10mg/ml Protein
10mM Imidazole buffer, pH=8.0
50mM NaCl
Reservoir:
18% PEG4000 (w/v),
0.1M Hepes pH=7.0,
10mM ATP,
Drop Ratio 1:1
Crystal Properties Matthews coefficient Solvent content 2 68.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.041 α = 90 b = 158.385 β = 90 c = 153.437 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2013-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.000, 2.066 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.093 47.68 95.2 0.073 0.085 10.4 3.8 79698
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.093 2.21 94.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 47.68 69661 3665 99.63 0.22253 0.21945 0.2318 0.28107 0.287 RANDOM 65.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 -0.94 1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.727 r_dihedral_angle_3_deg 17.633 r_dihedral_angle_4_deg 14.68 r_long_range_B_refined 9.27 r_long_range_B_other 9.27 r_dihedral_angle_1_deg 7.649 r_mcangle_other 6.627 r_mcangle_it 6.626 r_scangle_other 6.556 r_mcbond_it 5.016
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.727 r_dihedral_angle_3_deg 17.633 r_dihedral_angle_4_deg 14.68 r_long_range_B_refined 9.27 r_long_range_B_other 9.27 r_dihedral_angle_1_deg 7.649 r_mcangle_other 6.627 r_mcangle_it 6.626 r_scangle_other 6.556 r_mcbond_it 5.016 r_mcbond_other 5.01 r_scbond_it 4.868 r_scbond_other 4.868 r_angle_refined_deg 1.677 r_angle_other_deg 0.862 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8857 Nucleic Acid Atoms Solvent Atoms 634 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing