☰ Navigation Tabs
ACC1 Fab fragment in complex with citrullinated C1 epitope of CII (CG05)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MU0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20% (w/v) PEG 3350, 0.1 M Bistris-Propane pH 6.5, 0.2 M NaBr
Crystal Properties Matthews coefficient Solvent content 2.24 45.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 148.286 α = 90 b = 155.099 β = 90 c = 156.266 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 78.14 100 0.153 10.1 4.7 65914 31.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.17 100 0.807 1.9 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5MU0 3.1 78.14 62669 3245 99.84 0.23296 0.23133 0.2325 0.26396 0.2615 RANDOM 74.108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 1.78 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.275 r_dihedral_angle_4_deg 18.129 r_dihedral_angle_3_deg 16.813 r_dihedral_angle_1_deg 6.985 r_long_range_B_refined 3.098 r_long_range_B_other 3.098 r_mcangle_it 1.991 r_mcangle_other 1.991 r_scangle_other 1.726 r_angle_other_deg 1.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.275 r_dihedral_angle_4_deg 18.129 r_dihedral_angle_3_deg 16.813 r_dihedral_angle_1_deg 6.985 r_long_range_B_refined 3.098 r_long_range_B_other 3.098 r_mcangle_it 1.991 r_mcangle_other 1.991 r_scangle_other 1.726 r_angle_other_deg 1.646 r_angle_refined_deg 1.459 r_mcbond_it 1.145 r_mcbond_other 1.145 r_scbond_it 0.992 r_scbond_other 0.992 r_chiral_restr 0.115 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26877 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing