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Structure of the two C-terminal domains of bacteriophage K gp144
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 100 mM HEPES pH 7.5, 12% w/v PEG 4000, 100 mM sodium acetate
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.69 α = 90 b = 81.311 β = 90 c = 154.239 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97927 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.33 99.9 0.103 0.995 8.6 5.8 59974 20.281
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 99.8 0.737 0.718 2.1 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 29.33 56864 3008 99.78 0.16352 0.16126 0.1712 0.2062 0.2109 RANDOM 27.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 0.65 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.852 r_dihedral_angle_4_deg 15.378 r_dihedral_angle_3_deg 11.222 r_dihedral_angle_1_deg 7.147 r_long_range_B_refined 6.167 r_long_range_B_other 5.987 r_scangle_other 4.141 r_mcangle_other 3.097 r_mcangle_it 3.096 r_scbond_it 2.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.852 r_dihedral_angle_4_deg 15.378 r_dihedral_angle_3_deg 11.222 r_dihedral_angle_1_deg 7.147 r_long_range_B_refined 6.167 r_long_range_B_other 5.987 r_scangle_other 4.141 r_mcangle_other 3.097 r_mcangle_it 3.096 r_scbond_it 2.741 r_scbond_other 2.741 r_mcbond_it 2.282 r_mcbond_other 2.225 r_angle_refined_deg 1.656 r_angle_other_deg 0.928 r_chiral_restr 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4852 Nucleic Acid Atoms Solvent Atoms 617 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling autoSHARP phasing