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The Structure of ThcOx, the First Oxidase Protein from the Cyanobactin Pathways
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.75 293 1.0 M sodium citrate, 0.1 M CHES pH 7.75 2 VAPOR DIFFUSION 7.75 293 1.0 M sodium citrate, 0.1 M CHES pH 7.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.3 α = 90 b = 109.3 β = 90 c = 195.36 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2015-04-20 M SINGLE WAVELENGTH 2 2 x-ray 50 PIXEL DECTRIS PILATUS 12M 2016-02-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.7712 Diamond I03 2 SYNCHROTRON DIAMOND BEAMLINE I23 3.0955 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 72.84 100 0.083 17.9 8.1 35204 60.235
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.72 99.6 0.836 2.7 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.65 72.83 33383 1751 99.92 0.19815 0.19664 0.22838 0.2211 RANDOM 74.681
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.38 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_4_deg 16.459 r_dihedral_angle_3_deg 13.562 r_long_range_B_refined 7.67 r_long_range_B_other 7.67 r_dihedral_angle_1_deg 6.711 r_scangle_other 5.199 r_mcangle_it 4.755 r_mcangle_other 4.755 r_scbond_it 3.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_4_deg 16.459 r_dihedral_angle_3_deg 13.562 r_long_range_B_refined 7.67 r_long_range_B_other 7.67 r_dihedral_angle_1_deg 6.711 r_scangle_other 5.199 r_mcangle_it 4.755 r_mcangle_other 4.755 r_scbond_it 3.218 r_scbond_other 3.217 r_mcbond_it 2.919 r_mcbond_other 2.919 r_angle_refined_deg 1.294 r_angle_other_deg 1.056 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7344 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing