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Piriformospora indica PIIN_05872
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 200 mM ammonium sulfate,
100 mM sodium citrate pH 5.6,
15%(w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.61 52.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.37 α = 90 b = 52.37 β = 90 c = 198.13 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 37 98.9 0.044 16.66 3.47 9761
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 97.1 0.526 2.32 3.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 34.69 9031 729 98.99 0.20711 0.20403 0.2115 0.24461 0.2443 RANDOM 40.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.54 -0.54 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.757 r_dihedral_angle_3_deg 13.248 r_dihedral_angle_4_deg 12.626 r_long_range_B_refined 7.938 r_long_range_B_other 7.795 r_dihedral_angle_1_deg 6.334 r_scangle_other 5.585 r_scbond_it 3.801 r_scbond_other 3.792 r_mcangle_it 3.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.757 r_dihedral_angle_3_deg 13.248 r_dihedral_angle_4_deg 12.626 r_long_range_B_refined 7.938 r_long_range_B_other 7.795 r_dihedral_angle_1_deg 6.334 r_scangle_other 5.585 r_scbond_it 3.801 r_scbond_other 3.792 r_mcangle_it 3.269 r_mcangle_other 3.269 r_mcbond_it 2.647 r_mcbond_other 2.634 r_angle_refined_deg 1.825 r_angle_other_deg 0.961 r_chiral_restr 0.131 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 696 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXDE phasing