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HUMAN SPLEEN TYROSINE KINASE KINASE DOMAIN IN COMPLEX WITH AZANAPHTHYRIDINE INHIBITOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other In-house coordinates
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 PEG1500, HEPES, TACSIMATE, GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.18 43.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.849 α = 99.81 b = 41.78 β = 90.41 c = 86.991 γ = 100.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-03-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.0724 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 42.835 95.3 0.055 0.055 8.5 1.9 37810 29.388
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 92.8 0.4 1.8 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT In-house coordinates 1.95 20 35896 1888 95.21 0.1777 0.1751 0.1823 0.2281 0.2349 RANDOM 43.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.94 0.04 0.99 0.26 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.881 r_dihedral_angle_4_deg 16.415 r_dihedral_angle_3_deg 11.823 r_dihedral_angle_1_deg 4.025 r_mcangle_it 2.091 r_mcbond_it 1.269 r_mcbond_other 1.267 r_angle_refined_deg 1.19 r_angle_other_deg 0.763 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.881 r_dihedral_angle_4_deg 16.415 r_dihedral_angle_3_deg 11.823 r_dihedral_angle_1_deg 4.025 r_mcangle_it 2.091 r_mcbond_it 1.269 r_mcbond_other 1.267 r_angle_refined_deg 1.19 r_angle_other_deg 0.763 r_chiral_restr 0.078 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4296 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 96
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction