5LIO

Lysozyme, collected at rotation 360 degree per second


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29830% w/v Polyethylene glycol monomethyl ether 5,000, 1.0 M Sodium chloride, 50 mM Sodium acetate trihydrate pH 4.5
Crystal Properties
Matthews coefficientSolvent content
1.9838.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.37α = 90
b = 78.37β = 90
c = 37.044γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2014-05-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.49655.4299.50.08320.0613.3418979
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.496

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1DPX1.49655.421806391699.530.197210.194650.24878RANDOM18.294
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.350.35-0.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.892
r_dihedral_angle_3_deg13.744
r_dihedral_angle_4_deg11.551
r_long_range_B_refined7.863
r_long_range_B_other6.369
r_dihedral_angle_1_deg6.345
r_scangle_other3.722
r_scbond_it2.438
r_scbond_other2.436
r_mcangle_it1.997
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.892
r_dihedral_angle_3_deg13.744
r_dihedral_angle_4_deg11.551
r_long_range_B_refined7.863
r_long_range_B_other6.369
r_dihedral_angle_1_deg6.345
r_scangle_other3.722
r_scbond_it2.438
r_scbond_other2.436
r_mcangle_it1.997
r_mcangle_other1.996
r_angle_refined_deg1.926
r_mcbond_it1.415
r_mcbond_other1.413
r_angle_other_deg1.195
r_chiral_restr0.141
r_bond_refined_d0.019
r_gen_planes_refined0.01
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms998
Nucleic Acid Atoms
Solvent Atoms206
Heterogen Atoms2

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing