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Bottromycin maturation enzyme BotP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG 3350 (20 % (w/v)) and sodium malonate pH 7.0 (0.24 M)
Crystal Properties Matthews coefficient Solvent content 3.27 62.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.42 α = 90 b = 152.42 β = 90 c = 100.896 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 24.22 99.96 0.067 17 9.3 68447
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.82 99.96 0.543 3.3 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.76 24.22 64571 3440 99.26 0.17713 0.17635 0.1857 0.1913 0.1977 RANDOM 25.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.2 -0.4 1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.56 r_dihedral_angle_4_deg 15.359 r_dihedral_angle_3_deg 10.876 r_long_range_B_refined 7.473 r_long_range_B_other 6.421 r_dihedral_angle_1_deg 5.696 r_scangle_other 1.97 r_mcangle_it 1.535 r_mcangle_other 1.535 r_angle_refined_deg 1.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.56 r_dihedral_angle_4_deg 15.359 r_dihedral_angle_3_deg 10.876 r_long_range_B_refined 7.473 r_long_range_B_other 6.421 r_dihedral_angle_1_deg 5.696 r_scangle_other 1.97 r_mcangle_it 1.535 r_mcangle_other 1.535 r_angle_refined_deg 1.301 r_scbond_it 1.171 r_scbond_other 1.17 r_angle_other_deg 0.925 r_mcbond_it 0.888 r_mcbond_other 0.886 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3250 Nucleic Acid Atoms Solvent Atoms 484 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing