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Structure of mammalian respiratory Complex I, class2
ELECTRON MICROSCOPY
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
r_dihedral_angle_2_deg
38.45
r_dihedral_angle_3_deg
17.653
r_dihedral_angle_4_deg
8.196
r_long_range_B_refined
4.123
r_dihedral_angle_1_deg
4.044
r_angle_refined_deg
1.281
r_mcangle_it
1.23
r_mcbond_it
0.66
r_scbond_it
0.446
r_chiral_restr
0.09
RMS Deviations
Key
Refinement Restraint Deviation
r_dihedral_angle_2_deg
38.45
r_dihedral_angle_3_deg
17.653
r_dihedral_angle_4_deg
8.196
r_long_range_B_refined
4.123
r_dihedral_angle_1_deg
4.044
r_angle_refined_deg
1.281
r_mcangle_it
1.23
r_mcbond_it
0.66
r_scbond_it
0.446
r_chiral_restr
0.09
r_bond_refined_d
0.008
r_gen_planes_refined
0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Bovine respiratory Complex I
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
The specimen was vitrified in an environmental plunge-freeze apparatus, blot for 12-15 seconds after the diameter of the blotted meniscus ceases to sp ...
The specimen was vitrified in an environmental plunge-freeze apparatus, blot for 12-15 seconds after the diameter of the blotted meniscus ceases to spread and plunged.
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
33301
Reported Resolution (Å)
4.35
Resolution Method
FSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
RECIPROCAL
Refinement Protocol
OTHER
Refinement Target
Maximum likelihood
Overall B Value
86.75
Fitting Procedure
Details
Data Acquisition
Detector Type
FEI FALCON II (4k x 4k)
Electron Dose (electrons/Å**2)
35
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
59000
Calibrated Magnification
105263
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
IMAGE ACQUISITION
EPU
CTF CORRECTION
CTFFIND
4
MODEL FITTING
Coot
0.8.3
MODEL REFINEMENT
REFMAC
5.8.0134
FINAL EULER ASSIGNMENT
RELION
1.4
CLASSIFICATION
RELION
1.4
RECONSTRUCTION
RELION
1.4
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
NONE
Ctf was estimated from the whole micrograph. Ctf was corrected per particle.