☰ Navigation Tabs
Humanized 10G4 anti-leukotriene C4 antibody Fab fragment in complex with leukotriene C4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I9G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.15 M zinc acetate dihydrate; 20% PEG 3350; microseeds (grown in 0.2 M ammonium sulfate; 0.1 M sodium cacodylate trihydrate pH 6.5; 30% PEG 8000)
Crystal Properties Matthews coefficient Solvent content 2.1 41.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.88 α = 90 b = 41.631 β = 104.69 c = 93.126 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2015-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97940 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 100 99.9 0.067 17.8 3.7 39552
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 99.5 0.105 0.985 10.9 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3I9G 1.74 90.08 37557 1983 99.62 0.19169 0.19015 0.22037 0.2552 RANDOM 18.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 -0.31 -0.19 1.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.912 r_dihedral_angle_3_deg 11.921 r_dihedral_angle_4_deg 11.912 r_dihedral_angle_1_deg 6.229 r_scangle_it 1.778 r_angle_refined_deg 1.069 r_scbond_it 1.023 r_mcangle_it 0.721 r_mcbond_it 0.367 r_chiral_restr 0.063
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.912 r_dihedral_angle_3_deg 11.921 r_dihedral_angle_4_deg 11.912 r_dihedral_angle_1_deg 6.229 r_scangle_it 1.778 r_angle_refined_deg 1.069 r_scbond_it 1.023 r_mcangle_it 0.721 r_mcbond_it 0.367 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3255 Nucleic Acid Atoms Solvent Atoms 363 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing