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BRD4 bromodomain in complex with Cpd59 ((S)-1-(3-((2-fluoro-4-(1-methyl-1H-pyrazol-4-yl)phenyl)amino)-1-(tetrahydrofuran-3-yl)-6,7-dihydro-1H-pyrazolo[4,3-c]pyridin-5(4H)-yl)ethanone)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 287 0.1 M Bis-Tris pH 6.8, 18% PEG 3350, 20% ethylene glycol
Crystal Properties Matthews coefficient Solvent content 2.18 43.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.037 α = 90 b = 53.115 β = 90 c = 106.745 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 277 CCD ADSC QUANTUM 4 2016-01-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 1.0 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 50 97.6 0.116 6.2 3.9 47352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.18 97.9 0.633 0.744 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.14 50 44593 2383 97.68 0.1645 0.1635 0.1713 0.1824 0.1929 RANDOM 19.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 0.63 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.761 r_sphericity_free 20.511 r_dihedral_angle_4_deg 16.137 r_dihedral_angle_3_deg 11.778 r_rigid_bond_restr 8.015 r_sphericity_bonded 7.227 r_dihedral_angle_1_deg 5.227 r_angle_other_deg 3.325 r_mcangle_it 1.808 r_mcbond_it 1.703
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.761 r_sphericity_free 20.511 r_dihedral_angle_4_deg 16.137 r_dihedral_angle_3_deg 11.778 r_rigid_bond_restr 8.015 r_sphericity_bonded 7.227 r_dihedral_angle_1_deg 5.227 r_angle_other_deg 3.325 r_mcangle_it 1.808 r_mcbond_it 1.703 r_mcbond_other 1.69 r_angle_refined_deg 1.507 r_chiral_restr 0.109 r_bond_refined_d 0.009 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1048 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 76
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction