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Ketoreductase from module 3 of the bacillaene synthase from Bacillus subtilis 168
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4J1Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 9 mg/mL PksKR3, 150 mM NaCl, 10mM HEPES, pH 7.5 with 1 uL crystallization buffer (sodium citrate, 0.1 M HEPES pH7.0
Crystal Properties Matthews coefficient Solvent content 2.25 45.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.098 α = 90 b = 84.869 β = 90 c = 134.298 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 1 2013-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 71.74 97.1 21.75 6.4 37725
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4J1Q 1.98 71.74 34894 1819 97.12 0.208 0.20675 0.2135 0.23133 0.2409 RANDOM 25.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.931 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_4_deg 12.925 r_long_range_B_other 9.036 r_long_range_B_refined 9.033 r_scangle_other 6.591 r_dihedral_angle_1_deg 6.137 r_mcangle_it 4.93 r_mcangle_other 4.929 r_scbond_it 4.569
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.931 r_dihedral_angle_3_deg 13.112 r_dihedral_angle_4_deg 12.925 r_long_range_B_other 9.036 r_long_range_B_refined 9.033 r_scangle_other 6.591 r_dihedral_angle_1_deg 6.137 r_mcangle_it 4.93 r_mcangle_other 4.929 r_scbond_it 4.569 r_scbond_other 4.567 r_angle_other_deg 3.699 r_mcbond_other 3.507 r_mcbond_it 3.506 r_angle_refined_deg 1.602 r_chiral_restr 0.098 r_bond_refined_d 0.01 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3560 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing