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Structure of human PARP1 catalytic domain bound to a quinazoline-2,4(1H,3H)-dione inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 2.5M AMMONIUM SULFATE, 100mM TRIS
Crystal Properties Matthews coefficient Solvent content 2.35 47.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.43 α = 90 b = 92.37 β = 90 c = 164.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.987 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 92.37 99.5 19.3 12.1 33537
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 82 31737 1590 99.25 0.23598 0.23323 0.2377 0.29293 0.2947 RANDOM 25.485
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 1.4 -1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.146 r_dihedral_angle_4_deg 19.457 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 7.369 r_long_range_B_refined 5.957 r_long_range_B_other 5.957 r_mcangle_other 3.692 r_mcangle_it 3.691 r_scangle_other 3.219 r_mcbond_other 2.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.146 r_dihedral_angle_4_deg 19.457 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 7.369 r_long_range_B_refined 5.957 r_long_range_B_other 5.957 r_mcangle_other 3.692 r_mcangle_it 3.691 r_scangle_other 3.219 r_mcbond_other 2.078 r_mcbond_it 2.076 r_scbond_it 1.82 r_scbond_other 1.82 r_angle_refined_deg 1.581 r_angle_other_deg 1.092 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5517 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALEPACK data scaling PHASER phasing