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BT_4244 metallopeptidase from Bacteroides thetaiotaomicron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 PEG 3350, K/Na Tartrate, Tris-HCl pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.59 52.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.957 α = 90 b = 81.957 β = 90 c = 182.138 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97945 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 70.98 99.9 0.07 15.9 6.5 39361
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.22 100 0.366 4.1 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 70.98 37472 1834 99.84 0.17077 0.16881 0.1783 0.20984 0.2164 RANDOM 36.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -2.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.325 r_dihedral_angle_4_deg 16.16 r_dihedral_angle_3_deg 13.651 r_dihedral_angle_1_deg 6.655 r_long_range_B_refined 5.932 r_long_range_B_other 5.821 r_scangle_other 4.502 r_mcangle_it 3.296 r_mcangle_other 3.296 r_scbond_it 2.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.325 r_dihedral_angle_4_deg 16.16 r_dihedral_angle_3_deg 13.651 r_dihedral_angle_1_deg 6.655 r_long_range_B_refined 5.932 r_long_range_B_other 5.821 r_scangle_other 4.502 r_mcangle_it 3.296 r_mcangle_other 3.296 r_scbond_it 2.975 r_scbond_other 2.974 r_mcbond_it 2.312 r_mcbond_other 2.311 r_angle_refined_deg 1.528 r_angle_other_deg 0.816 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4796 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing