5JZG
CryoEM structure of the native empty particle of a human rhinovirus C
ELECTRON MICROSCOPY
| Sample |
|---|
| Rhinovirus C15a |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | GATAN CRYOPLUNGE 3 |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 3614 |
| Reported Resolution (Å) | 3.16 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | I |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | Correlation coefficient | ||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 25.7 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | 14000 |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | EMAN2 | 2.06 |
| PARTICLE SELECTION | DoG Picker | |
| IMAGE ACQUISITION | Leginon | 3.1 |
| CTF CORRECTION | fitctf2.py | |
| MODEL FITTING | UCSF Chimera | 1.11 |
| MODEL REFINEMENT | PHENIX | 1.10.1-2155 |
| MODEL REFINEMENT | Coot | 0.8.2 |
| INITIAL EULER ASSIGNMENT | jspr | |
| FINAL EULER ASSIGNMENT | jspr | |
| CLASSIFICATION | RELION | 1.3 |
| RECONSTRUCTION | jspr | |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING ONLY | CTF correction was performed on the fly during 2D alignment and 3D reconstruction. | 24882 | A mixed population of empty particles, full particles, and junk | |
