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Crystal structure of the light-driven sodium pump KR2 bound with iodide ions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 in meso lipidic cubic phase crystallization
Crystal Properties Matthews coefficient Solvent content 3.31 62.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.506 α = 90 b = 83.749 β = 90 c = 234.102 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.85 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 60 99.2 0.126 0.999 10.25 6.73 26628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.5 95.5 0.971 1.54 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 117.05 13612 720 99.88 0.1918 0.18978 0.1957 0.22609 0.2397 RANDOM 38.61
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.02 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 27.203 r_dihedral_angle_3_deg 14.469 r_long_range_B_refined 7.099 r_long_range_B_other 7.094 r_scangle_other 5.739 r_dihedral_angle_1_deg 5.466 r_mcangle_it 4.329 r_mcangle_other 4.328 r_scbond_it 3.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 27.203 r_dihedral_angle_3_deg 14.469 r_long_range_B_refined 7.099 r_long_range_B_other 7.094 r_scangle_other 5.739 r_dihedral_angle_1_deg 5.466 r_mcangle_it 4.329 r_mcangle_other 4.328 r_scbond_it 3.732 r_scbond_other 3.73 r_mcbond_it 2.987 r_mcbond_other 2.971 r_angle_refined_deg 1.749 r_angle_other_deg 1.065 r_chiral_restr 0.101 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2122 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXCD phasing SHELXDE phasing